J4_7QCA_012

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CAGUAACGG*CAUC*GUAC*GG

Length

19 nucleotides

Bulged bases

7QCA|1|S60|C|97

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QCA|1|S60|C|91
7QCA|1|S60|A|92
7QCA|1|S60|G|93
7QCA|1|S60|U|94
7QCA|1|S60|A|95
7QCA|1|S60|A|96
7QCA|1|S60|C|97
7QCA|1|S60|G|98
7QCA|1|S60|G|99
*
7QCA|1|S60|C|212
7QCA|1|S60|A|213
7QCA|1|S60|U|214
7QCA|1|S60|C|215
*
7QCA|1|S60|G|261
7QCA|1|S60|U|262
7QCA|1|S60|A|263
7QCA|1|S60|C|264
*
7QCA|1|S60|G|286
7QCA|1|S60|G|287

Current chains

Chain S60

RNA SSU

Nearby chains

Chain SE0

40S ribosomal protein S4

Chain SI0

40S ribosomal protein S8

Chain SL0

40S ribosomal protein S11

Chain SX0

uS12 SX0