J4_7QCA_013

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GAAC*GAGUAA*UGAGAAC*GUGC

Length

21 nucleotides

Bulged bases

7QCA|1|S60|A|119, 7QCA|1|S60|A|186

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QCA|1|S60|G|118
7QCA|1|S60|A|119
7QCA|1|S60|A|120
7QCA|1|S60|C|121
*
7QCA|1|S60|G|153
7QCA|1|S60|A|154
7QCA|1|S60|G|155
7QCA|1|S60|U|156
7QCA|1|S60|A|157
7QCA|1|S60|A|158
*
7QCA|1|S60|U|182
7QCA|1|S60|G|183
7QCA|1|S60|A|184
7QCA|1|S60|G|185
7QCA|1|S60|A|186
7QCA|1|S60|A|187
7QCA|1|S60|C|188
*
7QCA|1|S60|G|193
7QCA|1|S60|U|194
7QCA|1|S60|G|195
7QCA|1|S60|C|196

Current chains

Chain S60

RNA SSU

Nearby chains

Chain SE0

40S ribosomal protein S4

Chain SG0

40S ribosomal protein S6

Chain SI0

40S ribosomal protein S8