J4_7QGH_006

3D structure

PDB id

7QGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.48 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QGH_006 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0549

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7QGH|1|N|G|297
7QGH|1|N|G|298
7QGH|1|N|A|299
7QGH|1|N|A|300
7QGH|1|N|G|301
*
7QGH|1|N|C|316
7QGH|1|N|G|317
7QGH|1|N|C|318
7QGH|1|N|G|319
*
7QGH|1|N|C|323
7QGH|1|N|A|324
7QGH|1|N|G|325
*
7QGH|1|N|C|337
7QGH|1|N|G|338
7QGH|1|N|U|339
7QGH|1|N|A|340
7QGH|1|N|C|341

Current chains

Chain N

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L4

Chain h

50S ribosomal protein L24