3D structure

PDB id
7QGH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the E. coli disome - collided 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
4.48 Å

Loop

Sequence
CAAG*CGAAG*CGAG*CGUUAAG
Length
20 nucleotides
Bulged bases
7QGH|1|N|A|654
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7QGH_007 not in the Motif Atlas
Homologous match to J4_5J7L_020
Geometric discrepancy: 0.1447
The information below is about J4_5J7L_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_60168.1
Basepair signature
cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
Number of instances in this motif group
2

Unit IDs

7QGH|1|N|C|601
7QGH|1|N|A|602
7QGH|1|N|A|603
7QGH|1|N|G|604
*
7QGH|1|N|C|624
7QGH|1|N|G|625
7QGH|1|N|A|626
7QGH|1|N|A|627
7QGH|1|N|G|628
*
7QGH|1|N|C|635
7QGH|1|N|G|636
7QGH|1|N|A|637
7QGH|1|N|G|638
*
7QGH|1|N|C|650
7QGH|1|N|G|651
7QGH|1|N|U|652
7QGH|1|N|U|653
7QGH|1|N|A|654
7QGH|1|N|A|655
7QGH|1|N|G|656

Current chains

Chain N
23S rRNA

Nearby chains

Chain R
50S ribosomal protein L4
Chain Y
50S ribosomal protein L15
Chain q
50S ribosomal protein L35

Coloring options:


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