J4_7QGH_013

3D structure

PDB id

7QGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.48 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7QGH|1|N|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QGH_013 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0917

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7QGH|1|N|C|1833
7QGH|1|N|U|1834
7QGH|1|N|G|1835
*
7QGH|1|N|C|1905
7QGH|1|N|G|1906
*
7QGH|1|N|C|1924
7QGH|1|N|C|1925
7QGH|1|N|U|1926
7QGH|1|N|A|1927
7QGH|1|N|A|1928
7QGH|1|N|G|1929
7QGH|1|N|G|1930
7QGH|1|N|U|1931
7QGH|1|N|A|1932
7QGH|1|N|G|1933
*
7QGH|1|N|C|1967
7QGH|1|N|G|1968
7QGH|1|N|A|1969
7QGH|1|N|A|1970
7QGH|1|N|U|1971
7QGH|1|N|G|1972

Current chains

Chain N

23S rRNA

Nearby chains

Chain 0

Small subunit ribosomal RNA; SSU rRNA

Chain M

Transfer RNA; tRNA

Chain P

50S ribosomal protein L2