J4_7QGN_002

3D structure

PDB id

7QGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.37 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7QGN|1|0|C|183

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QGN_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1563

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7QGN|1|0|G|142
7QGN|1|0|A|143
7QGN|1|0|G|144
*
7QGN|1|0|C|178
7QGN|1|0|A|179
7QGN|1|0|U|180
7QGN|1|0|A|181
7QGN|1|0|A|182
7QGN|1|0|C|183
7QGN|1|0|G|184
*
7QGN|1|0|C|193
7QGN|1|0|C|194
7QGN|1|0|A|195
7QGN|1|0|A|196
7QGN|1|0|A|197
7QGN|1|0|G|198
*
7QGN|1|0|U|219
7QGN|1|0|G|220
7QGN|1|0|C|221

Current chains

Chain 0

16S rRNA

Nearby chains

Chain u

30S ribosomal protein S20