J4_7QGN_006

3D structure

PDB id

7QGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.37 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7QGN|1|N|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QGN_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1102

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7QGN|1|N|C|268
7QGN|1|N|C|269
*
7QGN|1|N|G|370
7QGN|1|N|A|371
7QGN|1|N|G|372
7QGN|1|N|U|373
7QGN|1|N|A|374
7QGN|1|N|G|375
*
7QGN|1|N|U|399
7QGN|1|N|G|400
7QGN|1|N|A|401
7QGN|1|N|A|402
7QGN|1|N|U|403
7QGN|1|N|A|404
7QGN|1|N|U|405
7QGN|1|N|G|406
*
7QGN|1|N|C|421
7QGN|1|N|A|422
7QGN|1|N|A|423
7QGN|1|N|G|424

Current chains

Chain N

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L9

Chain k

50S ribosomal protein L28