J4_7QGN_011

3D structure

PDB id

7QGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.37 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

7QGN|1|N|G|1341

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QGN_011 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0584

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7QGN|1|N|U|1313
7QGN|1|N|C|1314
*
7QGN|1|N|G|1338
7QGN|1|N|G|1339
7QGN|1|N|U|1340
7QGN|1|N|G|1341
7QGN|1|N|A|1342
7QGN|1|N|G|1343
*
7QGN|1|N|C|1404
7QGN|1|N|U|1405
*
7QGN|1|N|A|1597
7QGN|1|N|A|1598
7QGN|1|N|U|1599
7QGN|1|N|C|1600
7QGN|1|N|G|1601
7QGN|1|N|U|1602
7QGN|1|N|A|1603

Current chains

Chain N

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L23

Chain p

50S ribosomal protein L34