J4_7QGR_006

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QGR_006 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0549

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7QGR|1|N|G|297
7QGR|1|N|G|298
7QGR|1|N|A|299
7QGR|1|N|A|300
7QGR|1|N|G|301
*
7QGR|1|N|C|316
7QGR|1|N|G|317
7QGR|1|N|C|318
7QGR|1|N|G|319
*
7QGR|1|N|C|323
7QGR|1|N|A|324
7QGR|1|N|G|325
*
7QGR|1|N|C|337
7QGR|1|N|G|338
7QGR|1|N|U|339
7QGR|1|N|A|340
7QGR|1|N|C|341

Current chains

Chain N

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L4

Chain h

50S ribosomal protein L24