J4_7QGR_007

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

7QGR|1|N|A|654

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QGR_007 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1447

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

7QGR|1|N|C|601
7QGR|1|N|A|602
7QGR|1|N|A|603
7QGR|1|N|G|604
*
7QGR|1|N|C|624
7QGR|1|N|G|625
7QGR|1|N|A|626
7QGR|1|N|A|627
7QGR|1|N|G|628
*
7QGR|1|N|C|635
7QGR|1|N|G|636
7QGR|1|N|A|637
7QGR|1|N|G|638
*
7QGR|1|N|C|650
7QGR|1|N|G|651
7QGR|1|N|U|652
7QGR|1|N|U|653
7QGR|1|N|A|654
7QGR|1|N|A|655
7QGR|1|N|G|656

Current chains

Chain N

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L4

Chain Y

50S ribosomal protein L15

Chain q

50S ribosomal protein L35