J4_7QGU_002

3D structure

PDB id

7QGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the B. subtilis disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.75 Å

Loop

Sequence

UGAAG*CGCC*GGA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QGU_002 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.1444

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

7QGU|1|A|U|340
7QGU|1|A|G|341
7QGU|1|A|A|342
7QGU|1|A|A|343
7QGU|1|A|G|344
*
7QGU|1|A|C|360
7QGU|1|A|G|361
7QGU|1|A|C|362
7QGU|1|A|C|363
*
7QGU|1|A|G|367
7QGU|1|A|G|368
7QGU|1|A|A|369
*
7QGU|1|A|U|381
7QGU|1|A|G|382
7QGU|1|A|U|383
7QGU|1|A|A|384
7QGU|1|A|G|385

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24