J4_7QGU_004

3D structure

PDB id

7QGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the B. subtilis disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.75 Å

Loop

Sequence

CGAAAG*CC*GAUC*GG

Length

14 nucleotides

Bulged bases

7QGU|1|A|G|1311, 7QGU|1|A|A|1312, 7QGU|1|A|A|1314, 7QGU|1|A|U|1692

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QGU_004 not in the Motif Atlas

Homologous match to J4_4WF9_004

Geometric discrepancy: 0.2444

The information below is about J4_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7QGU|1|A|C|1310
7QGU|1|A|G|1311
7QGU|1|A|A|1312
7QGU|1|A|A|1313
7QGU|1|A|A|1314
7QGU|1|A|G|1315
*
7QGU|1|A|C|1333
7QGU|1|A|C|1334
*
7QGU|1|A|G|1690
7QGU|1|A|A|1691
7QGU|1|A|U|1692
7QGU|1|A|C|1693
*
7QGU|1|A|G|2038
7QGU|1|A|G|2039

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22

Chain b

50S ribosomal protein L32