J4_7QGU_009

3D structure

PDB id

7QGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the B. subtilis disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.75 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

7QGU|1|A|A|2000

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QGU_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1234

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

7QGU|1|A|C|1862
7QGU|1|A|U|1863
7QGU|1|A|G|1864
*
7QGU|1|A|C|1934
7QGU|1|A|G|1935
*
7QGU|1|A|C|1953
7QGU|1|A|C|1954
7QGU|1|A|U|1955
7QGU|1|A|A|1956
7QGU|1|A|A|1957
7QGU|1|A|G|1958
7QGU|1|A|G|1959
7QGU|1|A|U|1960
7QGU|1|A|A|1961
7QGU|1|A|G|1962
*
7QGU|1|A|C|1996
7QGU|1|A|G|1997
7QGU|1|A|A|1998
7QGU|1|A|A|1999
7QGU|1|A|A|2000
7QGU|1|A|G|2001

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain W

Small subunit ribosomal RNA; SSU rRNA

Chain z

Transfer RNA; tRNA