J4_7QIW_007

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAA(PSU)G

Length

21 nucleotides

Bulged bases

7QIW|1|2|PSU|2317

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QIW_007 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.1319

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIW|1|2|C|2195
7QIW|1|2|U|2196
7QIW|1|2|G|2197
*
7QIW|1|2|C|2251
7QIW|1|2|G|2252
*
7QIW|1|2|C|2270
7QIW|1|2|U|2271
7QIW|1|2|U|2272
7QIW|1|2|A|2273
7QIW|1|2|A|2274
7QIW|1|2|G|2275
7QIW|1|2|G|2276
7QIW|1|2|U|2277
7QIW|1|2|A|2278
7QIW|1|2|G|2279
*
7QIW|1|2|U|2313
7QIW|1|2|G|2314
7QIW|1|2|A|2315
7QIW|1|2|A|2316
7QIW|1|2|PSU|2317
7QIW|1|2|G|2318

Current chains

Chain 2

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L8