J4_7QIZ_002

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CAAG*CGCC*GAG*CGUCG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIZ|1|2|C|183
7QIZ|1|2|A|184
7QIZ|1|2|A|185
7QIZ|1|2|G|186
*
7QIZ|1|2|C|202
7QIZ|1|2|G|203
7QIZ|1|2|C|204
7QIZ|1|2|C|205
*
7QIZ|1|2|G|209
7QIZ|1|2|A|210
7QIZ|1|2|G|211
*
7QIZ|1|2|C|223
7QIZ|1|2|G|224
7QIZ|1|2|U|225
7QIZ|1|2|C|226
7QIZ|1|2|G|227

Current chains

Chain 2

25S rRNA

Nearby chains

Chain F

Ribos_L4_asso_C domain-containing protein

Chain a

KOW domain-containing protein