J4_7QIZ_007

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAA(PSU)G

Length

21 nucleotides

Bulged bases

7QIZ|1|2|PSU|2317

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QIZ_007 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.1334

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIZ|1|2|C|2195
7QIZ|1|2|U|2196
7QIZ|1|2|G|2197
*
7QIZ|1|2|C|2251
7QIZ|1|2|G|2252
*
7QIZ|1|2|C|2270
7QIZ|1|2|U|2271
7QIZ|1|2|U|2272
7QIZ|1|2|A|2273
7QIZ|1|2|A|2274
7QIZ|1|2|G|2275
7QIZ|1|2|G|2276
7QIZ|1|2|U|2277
7QIZ|1|2|A|2278
7QIZ|1|2|G|2279
*
7QIZ|1|2|U|2313
7QIZ|1|2|G|2314
7QIZ|1|2|A|2315
7QIZ|1|2|A|2316
7QIZ|1|2|PSU|2317
7QIZ|1|2|G|2318

Current chains

Chain 2

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L8

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain t

60S ribosomal protein L41