J4_7QIZ_009
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CUAAG*(PSU)UGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 7QIZ|1|2|A|2661
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7QIZ_009 not in the Motif Atlas
- Homologous match to J4_8C3A_008
- Geometric discrepancy: 0.1883
- The information below is about J4_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7QIZ|1|2|C|2658
7QIZ|1|2|U|2659
7QIZ|1|2|A|2660
7QIZ|1|2|A|2661
7QIZ|1|2|G|2662
*
7QIZ|1|2|PSU|2716
7QIZ|1|2|U|2717
7QIZ|1|2|G|2718
7QIZ|1|2|A|2719
7QIZ|1|2|U|2720
*
7QIZ|1|2|A|2744
7QIZ|1|2|C|2745
7QIZ|1|2|C|2746
*
7QIZ|1|2|G|2755
7QIZ|1|2|U|2756
7QIZ|1|2|G|2757
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain G
- Ribosomal_L18_c domain-containing protein
- Chain V
- 60S ribosomal protein eL21
- Chain d
- 60S ribosomal protein L29
- Chain p
- 60S ribosomal protein eL42
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