J4_7QP7_002
3D structure
- PDB id
- 7QP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 48S initiation complex in closed state (h48S AUG closed)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AAG*CGAAAG*CCA(PSU)AAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 7QP7|1|A|A|672, 7QP7|1|A|A|1083, 7QP7|1|A|C|1085, 7QP7|1|A|A|1087
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7QP7_002 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1228
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
7QP7|1|A|A|671
7QP7|1|A|A|672
7QP7|1|A|G|673
*
7QP7|1|A|C|1032
7QP7|1|A|G|1033
7QP7|1|A|A|1034
7QP7|1|A|A|1035
7QP7|1|A|A|1036
7QP7|1|A|G|1037
*
7QP7|1|A|C|1078
7QP7|1|A|C|1079
7QP7|1|A|A|1080
7QP7|1|A|PSU|1081
7QP7|1|A|A|1082
7QP7|1|A|A|1083
7QP7|1|A|A|1084
7QP7|1|A|C|1085
7QP7|1|A|G|1086
7QP7|1|A|A|1087
7QP7|1|A|U|1088
7QP7|1|A|G|1089
*
7QP7|1|A|U|1160
7QP7|1|A|U|1161
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain 9
- 60S ribosomal protein L41
- Chain B
- 40S ribosomal protein S11
- Chain E
- 40S ribosomal protein S23
- Chain I
- 40S ribosomal protein S13
- Chain J
- 40S ribosomal protein S15a
- Chain P
- 40S ribosomal protein S14
- Chain Q
- 40S ribosomal protein S26
- Chain y
- Eukaryotic translation initiation factor 3 subunit C
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