J4_7QQ3_001

3D structure

PDB id

7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7QQ3|1|I|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QQ3_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1017

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7QQ3|1|I|C|268
7QQ3|1|I|C|269
*
7QQ3|1|I|G|370
7QQ3|1|I|A|371
7QQ3|1|I|G|372
7QQ3|1|I|U|373
7QQ3|1|I|A|374
7QQ3|1|I|G|375
*
7QQ3|1|I|U|399
7QQ3|1|I|G|400
7QQ3|1|I|A|401
7QQ3|1|I|A|402
7QQ3|1|I|U|403
7QQ3|1|I|A|404
7QQ3|1|I|U|405
7QQ3|1|I|G|406
*
7QQ3|1|I|C|421
7QQ3|1|I|A|422
7QQ3|1|I|A|423
7QQ3|1|I|G|424

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L28