J4_7QQ3_011
3D structure
- PDB id
- 7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GGGC*GAC*GGAAG*UGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7QQ3_011 not in the Motif Atlas
- Homologous match to J4_5J7L_028
- Geometric discrepancy: 0.0566
- The information below is about J4_5J7L_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.4
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
7QQ3|1|I|G|2643
7QQ3|1|I|G|2644
7QQ3|1|I|G|2645
7QQ3|1|I|C|2646
*
7QQ3|1|I|G|2674
7QQ3|1|I|A|2675
7QQ3|1|I|C|2676
*
7QQ3|1|I|G|2731
7QQ3|1|I|G|2732
7QQ3|1|I|A|2733
7QQ3|1|I|A|2734
7QQ3|1|I|G|2735
*
7QQ3|1|I|U|2769
7QQ3|1|I|G|2770
7QQ3|1|I|C|2771
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain L
- 50S ribosomal protein L3
- Chain R
- 50S ribosomal protein L13
- Chain S
- 50S ribosomal protein L14
Coloring options: