J4_7QV1_002

3D structure

PDB id

7QV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis collided disome (Leading 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CC*GAGUAC*GGAAUCCG*CAAG

Length

20 nucleotides

Bulged bases

7QV1|1|V|C|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QV1_002 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.202

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

7QV1|1|V|C|271
7QV1|1|V|C|272
*
7QV1|1|V|G|417
7QV1|1|V|A|418
7QV1|1|V|G|419
7QV1|1|V|U|420
7QV1|1|V|A|421
7QV1|1|V|C|422
*
7QV1|1|V|G|446
7QV1|1|V|G|447
7QV1|1|V|A|448
7QV1|1|V|A|449
7QV1|1|V|U|450
7QV1|1|V|C|451
7QV1|1|V|C|452
7QV1|1|V|G|453
*
7QV1|1|V|C|468
7QV1|1|V|A|469
7QV1|1|V|A|470
7QV1|1|V|G|471

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L9

Chain u

50S ribosomal protein L28