J4_7QV1_003

3D structure

PDB id

7QV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis collided disome (Leading 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAAG*CGCC*GGA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QV1_003 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1366

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

7QV1|1|V|U|340
7QV1|1|V|G|341
7QV1|1|V|A|342
7QV1|1|V|A|343
7QV1|1|V|G|344
*
7QV1|1|V|C|360
7QV1|1|V|G|361
7QV1|1|V|C|362
7QV1|1|V|C|363
*
7QV1|1|V|G|367
7QV1|1|V|G|368
7QV1|1|V|A|369
*
7QV1|1|V|U|381
7QV1|1|V|G|382
7QV1|1|V|U|383
7QV1|1|V|A|384
7QV1|1|V|G|385

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24