J4_7QV1_014

3D structure

PDB id

7QV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis collided disome (Leading 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAC*GAUGGUU*AUAAAAG*CAC

Length

20 nucleotides

Bulged bases

7QV1|1|a|G|181, 7QV1|1|a|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QV1_014 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.4769

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7QV1|1|a|G|141
7QV1|1|a|A|142
7QV1|1|a|C|143
*
7QV1|1|a|G|177
7QV1|1|a|A|178
7QV1|1|a|U|179
7QV1|1|a|G|180
7QV1|1|a|G|181
7QV1|1|a|U|182
7QV1|1|a|U|183
*
7QV1|1|a|A|206
7QV1|1|a|U|207
7QV1|1|a|A|208
7QV1|1|a|A|209
7QV1|1|a|A|210
7QV1|1|a|A|211
7QV1|1|a|G|212
*
7QV1|1|a|C|227
7QV1|1|a|A|228
7QV1|1|a|C|229

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20