J4_7QV3_001

3D structure

PDB id

7QV3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (MutS2 conf.2; Leading 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.14 Å

Loop

Sequence

GUAG*UGC*GAGGUCG*UC

Length

16 nucleotides

Bulged bases

7QV3|1|H|U|8, 7QV3|1|H|U|47, 7QV3|1|H|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QV3_001 not in the Motif Atlas

Homologous match to J4_5E81_027

Geometric discrepancy: 0.1747

The information below is about J4_5E81_027

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

7QV3|1|H|G|7
7QV3|1|H|U|8
7QV3|1|H|A|9
7QV3|1|H|G|10
*
7QV3|1|H|U|25
7QV3|1|H|G|26
7QV3|1|H|C|27
*
7QV3|1|H|G|43
7QV3|1|H|A|44
7QV3|1|H|G|45
7QV3|1|H|G|46
7QV3|1|H|U|47
7QV3|1|H|C|48
7QV3|1|H|G|49
*
7QV3|1|H|U|65
7QV3|1|H|C|66

Current chains

Chain H

P-site tRNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain V

Large subunit ribosomal RNA; LSU rRNA