J4_7QV3_016

3D structure

PDB id

7QV3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (MutS2 conf.2; Leading 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.14 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

7QV3|1|V|A|2000

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QV3_016 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1521

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

7QV3|1|V|C|1862
7QV3|1|V|U|1863
7QV3|1|V|G|1864
*
7QV3|1|V|C|1934
7QV3|1|V|G|1935
*
7QV3|1|V|C|1953
7QV3|1|V|C|1954
7QV3|1|V|U|1955
7QV3|1|V|A|1956
7QV3|1|V|A|1957
7QV3|1|V|G|1958
7QV3|1|V|G|1959
7QV3|1|V|U|1960
7QV3|1|V|A|1961
7QV3|1|V|G|1962
*
7QV3|1|V|C|1996
7QV3|1|V|G|1997
7QV3|1|V|A|1998
7QV3|1|V|A|1999
7QV3|1|V|A|2000
7QV3|1|V|G|2001

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

Transfer RNA; tRNA

Chain a

Small subunit ribosomal RNA; SSU rRNA