J4_7QVP_008

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUC*GCC*GCGCG*CGGAGCG

Length

18 nucleotides

Bulged bases

7QVP|1|L5|G|1269, 7QVP|1|L5|A|1270, 7QVP|1|L5|G|1271, 7QVP|1|L5|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QVP|1|L5|C|981
7QVP|1|L5|U|982
7QVP|1|L5|C|983
*
7QVP|1|L5|G|1070
7QVP|1|L5|C|1071
7QVP|1|L5|C|1072
*
7QVP|1|L5|G|1240
7QVP|1|L5|C|1241
7QVP|1|L5|G|1242
7QVP|1|L5|C|1243
7QVP|1|L5|G|1244
*
7QVP|1|L5|C|1267
7QVP|1|L5|G|1268
7QVP|1|L5|G|1269
7QVP|1|L5|A|1270
7QVP|1|L5|G|1271
7QVP|1|L5|C|1272
7QVP|1|L5|G|1273

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7