J4_7QVP_012

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

7QVP|1|L5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QVP|1|L5|G|2618
7QVP|1|L5|G|2619
*
7QVP|1|L5|U|2637
7QVP|1|L5|G|2638
7QVP|1|L5|U|2639
7QVP|1|L5|G|2640
7QVP|1|L5|A|2641
7QVP|1|L5|A|2642
*
7QVP|1|L5|U|2692
7QVP|1|L5|G|2693
7QVP|1|L5|G|2694
7QVP|1|L5|A|2695
7QVP|1|L5|A|2696
7QVP|1|L5|A|2697
7QVP|1|L5|G|2698
*
7QVP|1|L5|U|2718
7QVP|1|L5|C|2719

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22

Chain Lg

60S ribosomal protein L34

Chain Lk

60S ribosomal protein L38