J4_7QVP_014
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 7QVP|1|L5|U|3818
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7QVP_014 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.0999
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7QVP|1|L5|C|3696
7QVP|1|L5|U|3697
7QVP|1|L5|G|3698
*
7QVP|1|L5|C|3752
7QVP|1|L5|G|3753
*
7QVP|1|L5|C|3771
7QVP|1|L5|U|3772
7QVP|1|L5|U|3773
7QVP|1|L5|A|3774
7QVP|1|L5|A|3775
7QVP|1|L5|G|3776
7QVP|1|L5|G|3777
7QVP|1|L5|U|3778
7QVP|1|L5|A|3779
7QVP|1|L5|G|3780
*
7QVP|1|L5|U|3814
7QVP|1|L5|G|3815
7QVP|1|L5|A|3816
7QVP|1|L5|A|3817
7QVP|1|L5|U|3818
7QVP|1|L5|G|3819
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain B4
- Transfer RNA; tRNA
- Chain LA
- 60S ribosomal protein L8
- Chain Ln
- 60S ribosomal protein L41
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: