J4_7QVP_016
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 7QVP|1|L5|A|4234
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7QVP_016 not in the Motif Atlas
- Homologous match to J4_8C3A_008
- Geometric discrepancy: 0.1602
- The information below is about J4_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7QVP|1|L5|C|4231
7QVP|1|L5|U|4232
7QVP|1|L5|A|4233
7QVP|1|L5|A|4234
7QVP|1|L5|G|4235
*
7QVP|1|L5|U|4289
7QVP|1|L5|U|4290
7QVP|1|L5|G|4291
7QVP|1|L5|A|4292
7QVP|1|L5|U|4293
*
7QVP|1|L5|A|4317
7QVP|1|L5|C|4318
7QVP|1|L5|C|4319
*
7QVP|1|L5|G|4328
7QVP|1|L5|G|4329
7QVP|1|L5|G|4330
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LD
- 60S ribosomal protein L5
- Chain LT
- 60S ribosomal protein L21
- Chain Lb
- 60S ribosomal protein L29
- Chain Lo
- 60S ribosomal protein L36a
Coloring options: