J4_7R7A_005

3D structure

PDB id

7R7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GG*CU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7R7A_005 not in the Motif Atlas

Homologous match to J4_8C3A_005

Geometric discrepancy: 0.0849

The information below is about J4_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7R7A|1|1|G|1674
7R7A|1|1|G|1675
*
7R7A|1|1|C|1693
7R7A|1|1|U|1694
*
7R7A|1|1|A|1752
7R7A|1|1|G|1753
*
7R7A|1|1|U|1772
7R7A|1|1|C|1773

Current chains

Chain 1

25S rRNA

Nearby chains

Chain U

60S ribosomal protein L22-A

Chain g

60S ribosomal protein L34-A

Chain k

60S ribosomal protein L38