J4_7RQ8_001

3D structure

PDB id

7RQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

7RQ8|1|1A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7RQ8_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0571

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

7RQ8|1|1A|C|268
7RQ8|1|1A|U|269
*
7RQ8|1|1A|G|370
7RQ8|1|1A|A|371
7RQ8|1|1A|G|372
7RQ8|1|1A|U|373
7RQ8|1|1A|A|374
7RQ8|1|1A|C|375
*
7RQ8|1|1A|G|399
7RQ8|1|1A|G|400
7RQ8|1|1A|A|401
7RQ8|1|1A|A|402
7RQ8|1|1A|U|403
7RQ8|1|1A|C|404
7RQ8|1|1A|U|405
7RQ8|1|1A|G|406
*
7RQ8|1|1A|U|421
7RQ8|1|1A|A|422
7RQ8|1|1A|A|423
7RQ8|1|1A|G|424

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9