J4_7RQ9_005

3D structure

PDB id

7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

7RQ9|1|1A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7RQ9_005 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.0524

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7RQ9|1|1A|U|1313
7RQ9|1|1A|C|1314
*
7RQ9|1|1A|G|1338
7RQ9|1|1A|G|1339
7RQ9|1|1A|U|1340
7RQ9|1|1A|U|1341
7RQ9|1|1A|A|1342
7RQ9|1|1A|G|1343
*
7RQ9|1|1A|C|1404
7RQ9|1|1A|U|1405
*
7RQ9|1|1A|A|1597
7RQ9|1|1A|C|1598
7RQ9|1|1A|C|1599
7RQ9|1|1A|C|1600
7RQ9|1|1A|G|1601
7RQ9|1|1A|U|1602
7RQ9|1|1A|A|1603

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23