J4_7RQ9_010
3D structure
- PDB id
- 7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GGGC*GAC*GGAAG*CGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7RQ9_010 not in the Motif Atlas
- Homologous match to J4_9DFE_010
- Geometric discrepancy: 0.0622
- The information below is about J4_9DFE_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.5
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
7RQ9|1|1A|G|2643
7RQ9|1|1A|G|2644
7RQ9|1|1A|G|2645
7RQ9|1|1A|C|2646
*
7RQ9|1|1A|G|2674
7RQ9|1|1A|A|2675
7RQ9|1|1A|C|2676
*
7RQ9|1|1A|G|2731
7RQ9|1|1A|G|2732
7RQ9|1|1A|A|2733
7RQ9|1|1A|A|2734
7RQ9|1|1A|G|2735
*
7RQ9|1|1A|C|2769
7RQ9|1|1A|G|2770
7RQ9|1|1A|C|2771
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1E
- 50S ribosomal protein L3
- Chain 1N
- 50S ribosomal protein L13
- Chain 1O
- 50S ribosomal protein L14
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