J4_7RQ9_027

3D structure

PDB id

7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

7RQ9|1|2a|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7RQ9_027 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0715

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7RQ9|1|2a|G|115
7RQ9|1|2a|A|116
7RQ9|1|2a|G|117
7RQ9|1|2a|U|118
7RQ9|1|2a|A|119
7RQ9|1|2a|A|120
7RQ9|1|2a|C|121
7RQ9|1|2a|G|122
*
7RQ9|1|2a|U|239
7RQ9|1|2a|C|240
*
7RQ9|1|2a|G|286
7RQ9|1|2a|U|287
7RQ9|1|2a|A|288
7RQ9|1|2a|G|289
*
7RQ9|1|2a|C|311
7RQ9|1|2a|C|312

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2q

30S ribosomal protein S17