J4_7RQB_024

3D structure

PDB id

7RQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

7RQB|1|2a|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7RQB_024 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0492

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7RQB|1|2a|G|115
7RQB|1|2a|A|116
7RQB|1|2a|G|117
7RQB|1|2a|U|118
7RQB|1|2a|A|119
7RQB|1|2a|A|120
7RQB|1|2a|C|121
7RQB|1|2a|G|122
*
7RQB|1|2a|U|239
7RQB|1|2a|C|240
*
7RQB|1|2a|G|286
7RQB|1|2a|U|287
7RQB|1|2a|A|288
7RQB|1|2a|G|289
*
7RQB|1|2a|C|311
7RQB|1|2a|C|312

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2q

30S ribosomal protein S17