J4_7RR5_003

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7RR5_003 not in the Motif Atlas

Homologous match to J4_8P9A_013

Geometric discrepancy: 0.1411

The information below is about J4_8P9A_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_12410.1

Basepair signature

cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7RR5|1|C1|C|185
7RR5|1|C1|U|186
7RR5|1|C1|A|187
7RR5|1|C1|U|188
7RR5|1|C1|G|189
*
7RR5|1|C1|C|205
7RR5|1|C1|G|206
7RR5|1|C1|U|207
7RR5|1|C1|C|208
*
7RR5|1|C1|G|212
7RR5|1|C1|A|213
7RR5|1|C1|G|214
*
7RR5|1|C1|C|226
7RR5|1|C1|G|227
7RR5|1|C1|U|228
7RR5|1|C1|G|229
7RR5|1|C1|U|230
7RR5|1|C1|G|231

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C3

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

RPL4A isoform 1

Chain LY

60S ribosomal protein L26-A