3D structure

PDB id
7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosomal complex bound with Rbg1/Tma46
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
CAAAUAU*AG*UGAU*AG
Length
15 nucleotides
Bulged bases
7RR5|1|C1|A|1452, 7RR5|1|C1|U|1455
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7RR5_004 not in the Motif Atlas
Homologous match to J4_8C3A_003
Geometric discrepancy: 0.0975
The information below is about J4_8C3A_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7RR5|1|C1|C|1451
7RR5|1|C1|A|1452
7RR5|1|C1|A|1453
7RR5|1|C1|A|1454
7RR5|1|C1|U|1455
7RR5|1|C1|A|1456
7RR5|1|C1|U|1457
*
7RR5|1|C1|A|1475
7RR5|1|C1|G|1476
*
7RR5|1|C1|U|1877
7RR5|1|C1|G|1878
7RR5|1|C1|A|1879
7RR5|1|C1|U|1880
*
7RR5|1|C1|A|2352
7RR5|1|C1|G|2353

Current chains

Chain C1
25S rRNA

Nearby chains

Chain LP
60S ribosomal protein L17-A
Chain LR
60S ribosomal protein L19-A
Chain Ld
60S ribosomal protein L31-A

Coloring options:


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