J4_7RR5_004

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CAAAUAU*AG*UGAU*AG

Length

15 nucleotides

Bulged bases

7RR5|1|C1|A|1452, 7RR5|1|C1|U|1455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7RR5_004 not in the Motif Atlas

Homologous match to J4_8C3A_003

Geometric discrepancy: 0.0975

The information below is about J4_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RR5|1|C1|C|1451
7RR5|1|C1|A|1452
7RR5|1|C1|A|1453
7RR5|1|C1|A|1454
7RR5|1|C1|U|1455
7RR5|1|C1|A|1456
7RR5|1|C1|U|1457
*
7RR5|1|C1|A|1475
7RR5|1|C1|G|1476
*
7RR5|1|C1|U|1877
7RR5|1|C1|G|1878
7RR5|1|C1|A|1879
7RR5|1|C1|U|1880
*
7RR5|1|C1|A|2352
7RR5|1|C1|G|2353

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17-A

Chain LR

60S ribosomal protein L19-A

Chain Ld

60S ribosomal protein L31-A