3D structure

PDB id
7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosomal complex bound with Rbg1/Tma46
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
GACUG*CAUAG*UGAUU*AUUAAC
Length
21 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7RR5_007 not in the Motif Atlas
Homologous match to J4_8P9A_017
Geometric discrepancy: 0.1318
The information below is about J4_8P9A_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_07509.2
Basepair signature
cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
Number of instances in this motif group
3

Unit IDs

7RR5|1|C1|G|2130
7RR5|1|C1|A|2131
7RR5|1|C1|C|2132
7RR5|1|C1|U|2133
7RR5|1|C1|G|2134
*
7RR5|1|C1|C|2146
7RR5|1|C1|A|2147
7RR5|1|C1|U|2148
7RR5|1|C1|A|2149
7RR5|1|C1|G|2150
*
7RR5|1|C1|U|2186
7RR5|1|C1|G|2187
7RR5|1|C1|A|2188
7RR5|1|C1|U|2189
7RR5|1|C1|U|2190
*
7RR5|1|C1|A|2317
7RR5|1|C1|U|2318
7RR5|1|C1|U|2319
7RR5|1|C1|A|2320
7RR5|1|C1|A|2321
7RR5|1|C1|C|2322

Current chains

Chain C1
25S rRNA

Nearby chains

Chain C2
Small subunit ribosomal RNA; SSU rRNA
Chain LA
60S ribosomal protein L2-B
Chain Ln
60S ribosomal protein L41-A
Chain Lp
60S ribosomal protein L43-A

Coloring options:


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