J4_7RR5_010

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7RR5_010 not in the Motif Atlas

Homologous match to J4_8C3A_009

Geometric discrepancy: 0.1084

The information below is about J4_8C3A_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RR5|1|C1|U|3010
7RR5|1|C1|A|3011
7RR5|1|C1|A|3012
*
7RR5|1|C1|U|3042
7RR5|1|C1|C|3043
*
7RR5|1|C1|G|3098
7RR5|1|C1|C|3099
7RR5|1|C1|U|3100
*
7RR5|1|C1|A|3134
7RR5|1|C1|U|3135
7RR5|1|C1|G|3136

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

RPL3 isoform 1

Chain LO

60S ribosomal protein L16-A

Chain LV

60S ribosomal protein L23-B