J4_7RYF_001

3D structure

PDB id

7RYF (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7RYF|1|A|U|404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7RYF_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1228

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7RYF|1|A|C|275
7RYF|1|A|C|276
*
7RYF|1|A|G|369
7RYF|1|A|A|370
7RYF|1|A|G|371
7RYF|1|A|U|372
7RYF|1|A|A|373
7RYF|1|A|G|374
*
7RYF|1|A|U|398
7RYF|1|A|G|399
7RYF|1|A|A|400
7RYF|1|A|A|401
7RYF|1|A|U|402
7RYF|1|A|A|403
7RYF|1|A|U|404
7RYF|1|A|G|405
*
7RYF|1|A|C|420
7RYF|1|A|A|421
7RYF|1|A|A|422
7RYF|1|A|G|423

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain W

50S ribosomal protein L28