J4_7RYF_004

3D structure

PDB id

7RYF (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGACAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

7RYF|1|A|G|1266, 7RYF|1|A|A|1267, 7RYF|1|A|C|1268, 7RYF|1|A|A|1270, 7RYF|1|A|U|1645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7RYF_004 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.1713

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7RYF|1|A|C|1265
7RYF|1|A|G|1266
7RYF|1|A|A|1267
7RYF|1|A|C|1268
7RYF|1|A|A|1269
7RYF|1|A|A|1270
7RYF|1|A|A|1271
*
7RYF|1|A|U|1289
7RYF|1|A|C|1290
*
7RYF|1|A|G|1643
7RYF|1|A|C|1644
7RYF|1|A|U|1645
7RYF|1|A|U|1646
*
7RYF|1|A|A|2005
7RYF|1|A|G|2006

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L17

Chain R

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32