J4_7RYG_006

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

7RYG|1|A|G|1336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7RYG_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0994

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7RYG|1|A|U|1308
7RYG|1|A|C|1309
*
7RYG|1|A|G|1333
7RYG|1|A|G|1334
7RYG|1|A|U|1335
7RYG|1|A|G|1336
7RYG|1|A|A|1337
7RYG|1|A|G|1338
*
7RYG|1|A|C|1399
7RYG|1|A|U|1400
*
7RYG|1|A|A|1595
7RYG|1|A|A|1596
7RYG|1|A|U|1597
7RYG|1|A|C|1598
7RYG|1|A|G|1599
7RYG|1|A|U|1600
7RYG|1|A|A|1601

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L23