J4_7RYG_011

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GAUC*GAC*GGAAG*UAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7RYG_011 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.16

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7RYG|1|A|G|2639
7RYG|1|A|A|2640
7RYG|1|A|U|2641
7RYG|1|A|C|2642
*
7RYG|1|A|G|2670
7RYG|1|A|A|2671
7RYG|1|A|C|2672
*
7RYG|1|A|G|2727
7RYG|1|A|G|2728
7RYG|1|A|A|2729
7RYG|1|A|A|2730
7RYG|1|A|G|2731
*
7RYG|1|A|U|2765
7RYG|1|A|A|2766
7RYG|1|A|C|2767

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain I

50S ribosomal protein L13

Chain J

50S ribosomal protein L14