J4_7RYG_012

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GAGUAAUG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

7RYG|1|a|U|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7RYG_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2421

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7RYG|1|a|G|111
7RYG|1|a|A|112
7RYG|1|a|G|113
7RYG|1|a|U|114
7RYG|1|a|A|115
7RYG|1|a|A|116
7RYG|1|a|U|117
7RYG|1|a|G|118
*
7RYG|1|a|U|235
7RYG|1|a|C|236
*
7RYG|1|a|G|282
7RYG|1|a|U|283
7RYG|1|a|A|284
7RYG|1|a|G|285
*
7RYG|1|a|C|307
7RYG|1|a|C|308

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17