J4_7RYH_012

3D structure

PDB id

7RYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: Empty 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GAGUAAUG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

7RYH|1|a|U|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7RYH_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2356

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7RYH|1|a|G|111
7RYH|1|a|A|112
7RYH|1|a|G|113
7RYH|1|a|U|114
7RYH|1|a|A|115
7RYH|1|a|A|116
7RYH|1|a|U|117
7RYH|1|a|G|118
*
7RYH|1|a|U|235
7RYH|1|a|C|236
*
7RYH|1|a|G|282
7RYH|1|a|U|283
7RYH|1|a|A|284
7RYH|1|a|G|285
*
7RYH|1|a|C|307
7RYH|1|a|C|308

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17