J4_7S0S_002

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GGAAA*UGCC*GAC*GGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7S0S_002 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.1281

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

7S0S|1|C|G|378
7S0S|1|C|G|379
7S0S|1|C|A|380
7S0S|1|C|A|381
7S0S|1|C|A|382
*
7S0S|1|C|U|398
7S0S|1|C|G|399
7S0S|1|C|C|400
7S0S|1|C|C|401
*
7S0S|1|C|G|405
7S0S|1|C|A|406
7S0S|1|C|C|407
*
7S0S|1|C|G|419
7S0S|1|C|G|420
7S0S|1|C|U|421
7S0S|1|C|A|422
7S0S|1|C|C|423

Current chains

Chain C

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain W

50S ribosomal protein L24