J4_7S0S_008

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7S0S|1|C|U|2195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7S0S_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1537

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

7S0S|1|C|C|2050
7S0S|1|C|U|2051
7S0S|1|C|G|2052
*
7S0S|1|C|C|2129
7S0S|1|C|G|2130
*
7S0S|1|C|C|2148
7S0S|1|C|C|2149
7S0S|1|C|U|2150
7S0S|1|C|A|2151
7S0S|1|C|A|2152
7S0S|1|C|G|2153
7S0S|1|C|G|2154
7S0S|1|C|U|2155
7S0S|1|C|A|2156
7S0S|1|C|G|2157
*
7S0S|1|C|C|2191
7S0S|1|C|G|2192
7S0S|1|C|A|2193
7S0S|1|C|A|2194
7S0S|1|C|U|2195
7S0S|1|C|G|2196

Current chains

Chain C

23S rRNA

Nearby chains

Chain B

16S/23S rRNA (Cytidine-2'-O)-methyltransferase TlyA

Chain D

50S ribosomal protein L2