J4_7S1G_008

3D structure

PDB id

7S1G (explore in PDB, NAKB, or RNA 3D Hub)

Description

wild-type Escherichia coli stalled ribosome with antibiotic linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

7S1G|1|I|G|1271, 7S1G|1|I|A|1272, 7S1G|1|I|U|1273, 7S1G|1|I|A|1275, 7S1G|1|I|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7S1G_008 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0686

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7S1G|1|I|C|1270
7S1G|1|I|G|1271
7S1G|1|I|A|1272
7S1G|1|I|U|1273
7S1G|1|I|A|1274
7S1G|1|I|A|1275
7S1G|1|I|A|1276
*
7S1G|1|I|U|1294
7S1G|1|I|C|1295
*
7S1G|1|I|G|1645
7S1G|1|I|C|1646
7S1G|1|I|U|1647
7S1G|1|I|U|1648
*
7S1G|1|I|A|2009
7S1G|1|I|G|2010

Current chains

Chain I

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L17

Chain a

50S ribosomal protein L22

Chain i

50S ribosomal protein L32