J4_7S1H_012

3D structure

PDB id

7S1H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7S1H|1|I|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7S1H_012 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0921

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7S1H|1|I|C|1833
7S1H|1|I|U|1834
7S1H|1|I|2MG|1835
*
7S1H|1|I|C|1905
7S1H|1|I|G|1906
*
7S1H|1|I|C|1924
7S1H|1|I|C|1925
7S1H|1|I|U|1926
7S1H|1|I|A|1927
7S1H|1|I|A|1928
7S1H|1|I|G|1929
7S1H|1|I|G|1930
7S1H|1|I|U|1931
7S1H|1|I|A|1932
7S1H|1|I|G|1933
*
7S1H|1|I|C|1967
7S1H|1|I|G|1968
7S1H|1|I|A|1969
7S1H|1|I|A|1970
7S1H|1|I|U|1971
7S1H|1|I|G|1972

Current chains

Chain I

23S rRNA

Nearby chains

Chain C

Small subunit ribosomal RNA; SSU rRNA

Chain K

50S ribosomal protein L2