J4_7S1I_002

3D structure

PDB id

7S1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7S1I|1|C|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7S1I_002 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1562

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7S1I|1|C|G|115
7S1I|1|C|A|116
7S1I|1|C|G|117
7S1I|1|C|U|118
7S1I|1|C|A|119
7S1I|1|C|A|120
7S1I|1|C|U|121
7S1I|1|C|G|122
*
7S1I|1|C|U|239
7S1I|1|C|G|240
*
7S1I|1|C|C|286
7S1I|1|C|U|287
7S1I|1|C|A|288
7S1I|1|C|G|289
*
7S1I|1|C|C|311
7S1I|1|C|C|312

Current chains

Chain C

16S rRNA

Nearby chains

Chain x

30S ribosomal protein S16

Chain y

30S ribosomal protein S17